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Daptomycin: A Ring of Amino Acids With a Fatty Tail That Kills Gram-Positive Bacteria — What It Is and What Its Label Shows

Daptomycin is a cyclic lipopeptide antibiotic: thirteen amino acids, ten of them closed into a ring, with a fatty-acid tail, made by the soil bacterium Streptomyces roseosporus. It is given intravenously for complicated skin infections and Staphylococcus aureus bloodstream infections. Its label rules out pneumonia and warns about muscle damage.

FDA-approved (since 2003)Cyclic lipopeptide antibioticIntravenous only

Caroline S · Published 2026-10-11

Length

13 amino acids with a decanoyl (10-carbon fatty acid) tail; C72H101N17O26, molecular weight 1,620.67 (label)

Sequence

N-decanoyl-Trp-D-Asn-Asp-Thr-Gly-Orn-Asp-D-Ala-Asp-Gly-D-Ser-(3-methyl-Glu)-Kyn, the last ten residues closed into a ring through an ester bond to threonine (the label's chemical name, read as residues; 'Kyn' is the label's 3-anthraniloyl-alanine)

Origin

A fermentation product of the soil bacterium Streptomyces roseosporus (label). First US approval 2003-09-12, Cubicin (Cubist, NDA 021572, a new molecular entity)

Last reviewed

2026-10-11

What is it good for?

Treating complicated skin and skin-structure infections in adults and children aged 1 to 17, and Staphylococcus aureus bloodstream infections (bacteraemia), including right-sided infective endocarditis in adults. It is a hospital antibiotic for Gram-positive bacteria, including methicillin-resistant S. aureus (label).

Illustration: A molecular model of daptomycin with a white ring and deep green tail on a white lab bench.
Illustration

What it is

Daptomycin is an antibiotic made of 13 amino acids, ten of them closed into a ring, with a fatty-acid tail. The label calls it "a cyclic lipopeptide antibacterial agent derived from the fermentation of Streptomyces roseosporus", a soil bacterium. Its formula is C72H101N17O26, molecular weight 1,620.67.

Read as residues, the label's chemical name gives the chain: a decanoyl group (a 10-carbon fatty acid) on tryptophan, then asparagine, aspartate, threonine, glycine, ornithine, aspartate, alanine, aspartate, glycine, serine, a 3-methyl-glutamate and a kynurenine-like residue, the last of which closes the ring back onto threonine. Three of the residues are D-forms, the mirror images of the amino acids human proteins use — a sign of bacterial manufacture.

How it works

The label's microbiology section describes daptomycin as having "rapid, concentration-dependent bactericidal activity against Gram-positive bacteria in vitro," across most clinically relevant Gram-positive pathogens. In animal models its activity tracks the ratio of total drug exposure to the bacterium's minimum inhibitory concentration (AUC/MIC); the label adds that the parameter best linked to cure in people has not been established.

What the label's trials show

Use (label) Trial design Result
Complicated skin infections, adults Two randomised, investigator-blinded trials (9801, 9901), 534 on daptomycin 4 mg/kg vs 558 on vancomycin or an anti-staphylococcal penicillin Clinical success (ITT) 62.5% vs 60.9% and 80.4% vs 80.5%
Complicated skin infections, children 1–17 Randomised trial, 257 vs 132 Success at test of cure 88% (227/257) vs 86% (114/132)
S. aureus bacteraemia incl. right-sided endocarditis, adults Randomised, 120 on daptomycin 6 mg/kg vs 115 on standard therapy Adjudicated success six weeks after treatment 44.2% vs 41.7%; difference 2.4, 95% CI −10.2 to 15.1

The pattern in every row is similarity to standard therapy, not superiority. In the bacteraemia trial the confidence interval runs from 10 points worse to 15 points better.

Two subgroups the label itself flags. Success was lower in patients aged 65 and over in both indications. And in the bacteraemia trial, adjudicated success on daptomycin fell with kidney function — 60% (30/50) for bacteraemia patients with creatinine clearance above 80 mL/min, 14% (2/14) at 30 to under 50 — a drop the label says was not seen on the comparator.

What it is not approved for

  • Pneumonia. In phase 3 trials of community-acquired pneumonia, "the death rate and rates of serious cardiorespiratory adverse events were higher in daptomycin-treated patients," differences the label attributes to lack of therapeutic effect.
  • Left-sided infective endocarditis due to S. aureus.
  • Infants under one year, because of muscular, neuromuscular and nervous-system effects seen in neonatal dogs — an animal finding, labelled here as such.

Doses on the label

Reported from the label, for reference; the dose for any patient is set by the treating team.

Indication Adults (label)
Complicated skin and skin-structure infections 4 mg/kg once every 24 hours, for 7 to 14 days
S. aureus bacteraemia 6 mg/kg once every 24 hours, for 2 to 6 weeks

Doses above 6 mg/kg are not approved (label). With creatinine clearance below 30 mL/min, including dialysis, the label moves the same doses to once every 48 hours.

Safety

The label's warnings: anaphylaxis; myopathy and rhabdomyolysis, with CPK monitoring and stopping thresholds (above ~5× the upper limit with muscle symptoms, above ~10× without); eosinophilic pneumonia; DRESS; tubulointerstitial nephritis; peripheral neuropathy; and an increased INR (prolonged prothrombin time) on testing. In the adult skin trials, 1 of 534 patients had muscle pain or weakness with CPK above 4× normal; it resolved within days of stopping.

Where it stands

  • Approved in the US since 2003-09-12 (Cubicin, Cubist, NDA 021572, a new molecular entity).
  • Brand: every Cubicin and Cubicin RF product under that application is listed as discontinued.
  • Generics and other forms: 25 daptomycin applications in Drugs@FDA; 19 generic and 11 other prescription intravenous products are listed (openFDA, 2026-10-11).
  • Research record: PubMed indexes 4,691 records, 49 tagged as randomised trials (2026-10-11).

Daptomycin was compared with vancomycin, a glycopeptide antibiotic, in its skin-infection trials. Another fatty-tailed peptide drug in the library is the antifungal micafungin, and the glycopeptide dalbavancin treats the same kind of skin infection with one or two infusions.

What the research shows

Treats complicated skin and skin-structure infections

FDA-approved indication; two randomised investigator-blinded trials, 534 vs 558 adults, clinical success 62.5% vs 60.9% and 80.4% vs 80.5% against vancomycin or an anti-staphylococcal penicillin (label)

Treats S. aureus bacteraemia, including right-sided endocarditis

FDA-approved indication; one randomised trial, success 44.2% (53/120) vs 41.7% (48/115) for standard therapy, difference 2.4 points, 95% CI −10.2 to 15.1 (label)

Treats pneumonia

Excluded by the label: 'not indicated for the treatment of pneumonia'; in community-acquired pneumonia trials death and serious cardiorespiratory events were higher on daptomycin

Bars show how much of the evidence is in humans, not how well anything works.

Where it stands

United States

Approved since 2003-09-12. All Cubicin and Cubicin RF products under NDA 021572 are listed as discontinued; 25 daptomycin applications exist in Drugs@FDA, with 19 generic and 11 other prescription intravenous products listed (openFDA, 2026-10-11).

How it is given

Intravenous injection or infusion, once a day (label).

Published record

PubMed: 4,691 records for daptomycin, 49 tagged as randomised controlled trials (2026-10-11).

Frequently asked questions

Is daptomycin a peptide?

Yes. It is a chain of 13 amino acids, ten of them closed into a ring, with a 10-carbon fatty acid attached to the first one — the label calls it a cyclic lipopeptide. Several of the amino acids are unusual (D-forms, ornithine, kynurenine), because it is made by a bacterium rather than assembled from the standard set.

Why is daptomycin not used for pneumonia?

The label excludes pneumonia and reports that in phase 3 trials of community-acquired pneumonia, deaths and serious cardiorespiratory adverse events were higher on daptomycin than on the comparator, differences it attributes to lack of therapeutic effect. The label itself gives no further mechanism.

What is the muscle warning on daptomycin?

The label warns of myopathy and rhabdomyolysis and calls for monitoring of creatine phosphokinase (CPK), a muscle enzyme, with more frequent checks in people with kidney impairment. It sets discontinuation thresholds — CPK above about 5 times the upper limit with symptoms, or above about 10 times without — and notes that CPK rises appeared more often when the drug was given more than once a day.

Is daptomycin the same as vancomycin?

No. Both are peptide-based antibiotics for Gram-positive bacteria, and vancomycin was one of the comparators in daptomycin's skin-infection trials, but they are different molecules: vancomycin is a glycopeptide that blocks cell-wall building, daptomycin a cyclic lipopeptide with a fatty tail.

Is Cubicin still sold?

Drugs@FDA lists every Cubicin and Cubicin RF product under the original application, NDA 021572, as discontinued. Daptomycin remains available from generic manufacturers and under several other new drug applications.